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Large expert-curated database for benchmarking document similarity detection in biomedical literature search

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dc.creatorBrown, Peterspa
dc.creatorTan, Aik-Choonspa
dc.creatorEl-Esawi, Mohamed Aspa
dc.creatorLiehr, Thomasspa
dc.creatorBlanck, Oliverspa
dc.creatorGladue, Douglas Pspa
dc.creatorAlmeida, Gabriel M Fspa
dc.creatorCernava, Tomislavspa
dc.creatorSorzano, Carlos Ospa
dc.creatorYeung, Andy W Kspa
dc.creatorEngel, Michael Sspa
dc.creatorChandrasekaran, Arun Richardspa
dc.creatorMuth, Thilospa
dc.creatorStaege, Martin Sspa
dc.creatorDaulatabad, Swapna Vspa
dc.creatorWidera, Dariusspa
dc.creatorZhang, Junpengspa
dc.creatorMeule, Adrianspa
dc.creatorHonjo, Kenspa
dc.creatorPourret, Olivierspa
dc.creatorYin, Cong-Congspa
dc.creatorZhang, Zhonghengspa
dc.creatorCascella, Marcospa
dc.creatorFlegel, Willy Aspa
dc.creatorGoodyear, Carl Sspa
dc.creatorvan Raaij, Mark Jspa
dc.creatorBukowy-Bieryllo, Zuzannaspa
dc.creatorCampana, Luca Gspa
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dc.creatorLalaouna, Davidspa
dc.creatorHüttner, Felix Jspa
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dc.creatorYang, Longspa
dc.creatorCosta, Vincent Dspa
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dc.creatorBrown, James A Lspa
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dc.creatorM, Antoniospa
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dc.creatorLachat, Carlspa
dc.creatorLagisz, Malgorzataspa
dc.creatorLaky, Brendaspa
dc.creatorLammerding, Janspa
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dc.date.accessioned2020-06-11T13:21:39Z
dc.date.available2020-06-11T13:21:39Z
dc.date.created2019-10-29spa
dc.description.abstractDocument recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical science. © The Author(s) 2019. Published by Oxford University Press.eng
dc.format.mimetypeapplication/pdf
dc.identifier.doihttps://doi.org/10.1093/database/baz085
dc.identifier.issnISSN: 1758-0463
dc.identifier.urihttps://repository.urosario.edu.co/handle/10336/24855
dc.language.isoeng
dc.publisherOxford University Pressspa
dc.relation.citationEndPage67
dc.relation.citationStartPage1
dc.relation.citationTitleDatabase
dc.relation.citationVolumeVol. 2019
dc.relation.ispartofDatabase, ISSN: 1758-0463, Vol.2019, No. (octubre 2019); pp. 1-67spa
dc.relation.urihttps://academic.oup.com/database/article-pdf/doi/10.1093/database/baz085/33510718/baz085.pdfspa
dc.rights.accesRightsinfo:eu-repo/semantics/openAccess
dc.rights.accesoAbierto (Texto Completo)spa
dc.source.instnameinstname:Universidad del Rosariospa
dc.source.reponamereponame:Repositorio Institucional EdocURspa
dc.subject.keywordDatabasesspa
dc.subject.keywordBiomedical researchspa
dc.subject.keywordScientific research in health sciencesspa
dc.titleLarge expert-curated database for benchmarking document similarity detection in biomedical literature searchspa
dc.typearticleeng
dc.type.hasVersioninfo:eu-repo/semantics/publishedVersion
dc.type.spaArtículospa
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