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Gaps and bias of the Colombian Andes flora in databases
dc.contributor.advisor | Sánchez Andrade, Adriana | |
dc.contributor.advisor | Richardson, James | |
dc.contributor.advisor | Sarkinen, Tiina | |
dc.creator | Vargas Rincón, Carlos Alberto | |
dc.creator.degree | Doctor en Ciencias Biomédicas y Biológicas | |
dc.creator.degreeLevel | Doctorado | |
dc.creator.degreetype | Full time | |
dc.date.accessioned | 2024-02-27T12:57:37Z | |
dc.date.available | 2024-02-27T12:57:37Z | |
dc.date.created | 2023-09-12 | |
dc.date.embargoEnd | info:eu-repo/date/embargoEnd/2026-02-28 | |
dc.description | This dissertation therefore aims to establish and analyze the scope of the gaps, biases, as well as uncertainties at the taxonomic, geographic and environmental levels of the Colombian Andean flora available in databases. I also aim to analyze its implications in terms of the study of the patterns of richness of species in a floristically complex and diverse region. In order to study the gaps and biases in the information available in databases for the Andean flora of Colombia, this research includes four chapters. Chapter one describes the information sources used, the data problems, and the data cleaning and standardization process. Chapter two uses the standardized data from chapter one to describe and analyze gaps and spatial and environmental biases in the record of the Colombian Andean flora and its implications in the estimation of wealth for the region. Chapter three studies the taxonomic and life forms representativeness of the region's flora. Finally, chapter four studies the importance of data curation in information retrieval and its potential usefulness to fill gaps using the Flora de Bogota project as a model. | |
dc.description.abstract | This dissertation therefore aims to establish and analyze the scope of the gaps, biases, as well as uncertainties at the taxonomic, geographic and environmental levels of the Colombian Andean flora available in databases. I also aim to analyze its implications in terms of the study of the patterns of richness of species in a floristically complex and diverse region. In order to study the gaps and biases in the information available in databases for the Andean flora of Colombia, this research includes four chapters. Chapter one describes the information sources used, the data problems, and the data cleaning and standardization process. Chapter two uses the standardized data from chapter one to describe and analyze gaps and spatial and environmental biases in the record of the Colombian Andean flora and its implications in the estimation of wealth for the region. Chapter three studies the taxonomic and life forms representativeness of the region's flora. Finally, chapter four studies the importance of data curation in information retrieval and its potential usefulness to fill gaps using the Flora de Bogota project as a model. | |
dc.description.sponsorship | Colciencias | |
dc.format.extent | 149 pp | |
dc.format.mimetype | application/pdf | |
dc.geoLocation | Colombia | |
dc.identifier.doi | https://doi.org/10.48713/10336_42295 | |
dc.identifier.uri | https://repository.urosario.edu.co/handle/10336/42295 | |
dc.language.iso | spa | |
dc.publisher | Universidad del Rosario | |
dc.publisher.department | Escuela de Medicina y Ciencias de la Salud | |
dc.publisher.program | Doctorado en Ciencias Biomédicas y Biológicas | |
dc.rights | Attribution-NonCommercial-NoDerivatives 4.0 International | * |
dc.rights.accesRights | info:eu-repo/semantics/embargoedAccess | |
dc.rights.acceso | Restringido (Temporalmente bloqueado) | |
dc.rights.licencia | PARGRAFO: En caso de presentarse cualquier reclamación o acción por parte de un tercero en cuanto a los derechos de autor sobre la obra en cuestión, EL AUTOR, asumirá toda la responsabilidad, y saldrá en defensa de los derechos aquí autorizados; para todos los efectos la universidad actúa como un tercero de buena fe. | |
dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/4.0/ | * |
dc.source.bibliographicCitation | Antonelli A, Sanmartín I. 2011. Why are there so many plant species in the Neotropics? Taxon 60: 403–414. | |
dc.source.bibliographicCitation | Bacon CD, Silvestro D, Jaramillo C, Smith BT, Chakrabarty P, Antonelli A. 2015. Biological evidence supports an early and complex emergence of the Isthmus of Panama. Proceedings of the National Academy of Sciences 112: 6110–6115. | |
dc.source.bibliographicCitation | Bernal R, Grandstein R, Celis M (Eds.). 2016. Catálogo de plantas y líquenes de Colombia. Bogotá: Editorial Universidad Nacional de Colombia. Boakes EH, McGowan PJK, Fuller RA, Chang-Qing D, Clark NE, O’Connor K, Mace GM. 2010. Distorted views of biodiversity: Spatial and temporal bias in species occurrence data. PLoS Biology 8. | |
dc.source.bibliographicCitation | Boakes EH, McGowan PJK, Fuller RA, Chang-Qing D, Clark NE, O’Connor K, Mace GM. 2010. Distorted views of biodiversity: Spatial and temporal bias in species occurrence data. PLoS Biology 8. | |
dc.source.bibliographicCitation | Cardoso D, Särkinen T, Alexander S, Amorim AM, Bittrich V, Celis M, Daly DC, Fiaschi P, Funk VA, Giacomin LL, Goldenberg R, Heiden G, Iganci J, Kelloff CL, Knapp S, Cavalcante de Lima H, Machado AFP, dos Santos RM, Mello-Silva R, Michelangeli FA, Mitchell J, Moonlight P, de Moraes PLR, Mori SA, Nunes TS, Pennington TD, Pirani JR, Prance GT, de Queiroz LP, Rapini A, Riina R, Vargas-Rincon CA, Roque N, Shimizu G, Sobral M, Stehmann JR, Stevens WD, Taylor CM, Trovó M, van den Berg C, van der Werff H, Viana PL, Zartman CE, Forzza RC. 2017. Amazon plant diversity revealed by a taxonomically verified species list. Proceedings of the National Academy of Sciences 114: 10695–10700. | |
dc.source.bibliographicCitation | Daru BH, Park DS, Primack RB, Willis CG, Barrington DS, Whitfeld TJS, Seidler TG, Sweeney PW, Foster DR, Ellison AM, Davis CC. 2018. Widespread sampling biases in herbaria revealed from large-scale digitization. New Phytologist 217: 939–955. | |
dc.source.bibliographicCitation | Escobar, D., Gonzales, I., Amariles, D., Benítez, J.M., Londoño MC. 2016. Inventario de la biodiversidad de Colombia a nivel de especies. In: Gomez, M.F., L.A. , Andrade, G.I. y Rueda C, ed. Biodiversidad 2015. Estado y tendencias de la biodiversidad continental de Colombia. Bogotá D.C: Instituto Alexander von Humboldt. Bogotá, D.C., Colombia, 103. | |
dc.source.bibliographicCitation | Feeley KJ. 2012. Distributional migrations, expansions, and contractions of tropical plant species as revealed in dated herbarium records. Global Change Biology 18: 1335–1341. | |
dc.source.bibliographicCitation | Feeley KJ. 2015. Are we filling the data void? An assessment of the amount and extent of plant collection records and census data available for tropical South America. PLoS ONE 10: 1–17. | |
dc.source.bibliographicCitation | Feeley KJ, Silman MR. 2010. Modelling the responses of Andean and Amazonian plant species to climate change: The effects of georeferencing errors and the importance of data filtering. Journal of Biogeography 37: 733–740. | |
dc.source.bibliographicCitation | Feeley KJ, Silman MR. 2011a. The data void in modelling current and future distributions of tropical species. Global Change Biology 17: 626–630. | |
dc.source.bibliographicCitation | Feeley KJ, Silman MR. 2011b. Keep collecting: Accurate species distribution modelling requires more collections than previously thought. Diversity and Distributions 17: 1132–1140. | |
dc.source.bibliographicCitation | Feeley KJ, Stroud JT, Perez TM. 2017. Most ‘ global ’ reviews of species ’ responses to climate change are not truly global. Diversity and Distributions 23: 231–234. | |
dc.source.bibliographicCitation | García Márquez J, Dormann C, Sommer JH, Schmidt M, Thiombiano A, Sylvestre Da S, Chatelain C, Dressler S, Barthlott W. 2012. A methodological framework to quantify the spatial quality of biological databases. Biodiversity & Ecology 4: 25–39. | |
dc.source.bibliographicCitation | Gentry AH. 1995. Patterns of diversity and floristic composition in Neotropical montane forest. In: Churchill SP,, In: Balslev H,, In: Forero E,, In: Luteyn JL, eds. Biodiversity and conservation of neotropical montane forests. Nueva York: The New York Botanical Garden, 103–126. | |
dc.source.bibliographicCitation | Goodwin ZA, Harris DJ, Filer D, Wood JRII, Scotland RW. 2015. Widespread mistaken identity in tropical plant collections. Current Biology 25: R1066–R1067. | |
dc.source.bibliographicCitation | Graham A. 2009. the Andes: a Geological Overview From aGraham, A., 2009. the Andes: a Geological Overview From a Biological Perspective. Ann. Missouri Bot. Gard. 96, 371–385. https://doi.org/10.3417/2007146 Biological Perspective. Annals of the Missouri Botanical Garden 96: 371–385. | |
dc.source.bibliographicCitation | van der Hammen T. 2000. Aspectos de historia y ecología de la biodiversidad norandina y amazónica. Rev Acad Colomb Cienc 24: 231–245. | |
dc.source.bibliographicCitation | Hortal J, de Bello F, Diniz-Filho JAF, Lewinsohn TM, Lobo JM, Ladle RJ. 2015. Seven shortfalls that beset large-scale knowledge of biodiversity. Annual Review of Ecology, Evolution, and Systematics 46: 523–549. | |
dc.source.bibliographicCitation | Hortal J, Jiménez-Valverde A, Gómez JF, Lobo JM, Baselga A. 2008. Historical bias in biodiversity inventories affects the observed environmental niche of the species. Oikos 117: 847–858. | |
dc.source.bibliographicCitation | Hortal J, Lobo JM, Jiménez-Valverde A. 2007. Limitations of biodiversity databases: Case study on seed-plant diversity in Tenerife, Canary Islands. Conservation Biology 21: 853–863. | |
dc.source.bibliographicCitation | James SA, Soltis PS, Belbin L, Chapman AD, Nelson G, Paul DL, Collins M. 2018. Herbarium data: Global biodiversity and societal botanical needs for novel research: Global. Applications in Plant Sciences 6: 1–8. | |
dc.source.bibliographicCitation | Lister AM, Brooks SJ, Fenberg PB, Glover AG, James KE, Johnson KG, Michel E, Okamura B, Spencer M, Stewart JR, Todd JA, Valsami-Jones E, Young J. 2011. Natural history collections as sources of long-term datasets. Trends in Ecology and Evolution 26: 153–154. | |
dc.source.bibliographicCitation | Londoño-Murcia, M.C., González, I. & Bello LC. 2014. Registros biológicos en línea y vacíos de información. In: Bello, J.C., Báez, M., Gómez, M.F., Orrego, O. y Nagele L, ed. Biodiversidad 2014: Reporte de estado de la biodiversidad en Colombia. Bogotá D.C., Colombia.: Instituto Alexander von Humboldt, . | |
dc.source.bibliographicCitation | Maldonado C, Molina CI, Zizka A, Persson C, Taylor CM, Albán J, Chilquillo E, Rønsted N, Antonelli A. 2015. Estimating species diversity and distribution in the era of Big Data: To what extent can we trust public databases? Global Ecology and Biogeography 24: 973–984. | |
dc.source.bibliographicCitation | Meyer C, Weigelt P, Kreft H, Lambers JHR. 2016. Multidimensional biases, gaps and uncertainties in global plant occurrence information. Ecology Letters 19: 992–1006. | |
dc.source.bibliographicCitation | Moreno L.A., Rueda, C. y Andrade GI (Eds. . (Ed.). 2017. Biodiversidad 2017. Estado y tendencias de la biodiversdiad continental de Colombia. Instituto de Investigación de Recursos biológicos Alexander von Humboldt. Bogotá.D.C., Colombia. | |
dc.source.bibliographicCitation | Mutke J, Weigend M. 2017. Mesoscale patterns of plant diversity in Andean South America based on combined checklist and GBIF data. Berichte der Reinhold-Tüxen-Gesellschaft 29: 83–97. | |
dc.source.bibliographicCitation | Myers N, Mittermeier R, Mittermeier C, da Fonseca G, Kent J. 2000. Biodiversity hotspots for conservation priorities. Nature 403: 853–858. Nürk NM, Scheriau C, Madriñán S. 2013. Explosive radiation in high Andean Hypericum-rates of diversification among New World lineages. Frontiers in Genetics 4: 1–14. | |
dc.source.bibliographicCitation | Nürk NM, Scheriau C, Madriñán S. 2013. Explosive radiation in high Andean Hypericum-rates of diversification among New World lineages. Frontiers in Genetics 4: 1–14. | |
dc.source.bibliographicCitation | Oliveira U, Pereira Paglia A, Brescovit AD, de Carvalho CJB, Paiva Silva D, Rezende DT, Leite FSF, Nogueira Batista JA, Pena Barbosa JPP, Stehmann JR, Ascher JS, Ferreira de Vasconcelos M, De Marco P, Lowenberg-Neto P, Guimaraes Dias P, Gianluppi Ferro V, Santos AJ. 2016. The strong influence of collection bias on biodiversity knowledge shortfalls of Brazilian terrestrial biodiversity. Diversity and Distributions 22: 1232–1244 | |
dc.source.bibliographicCitation | Orme CDL, Davies RG, Burgess M, Eigenbrod F, Pickup N, Olson VA, Webster AJ, Ding TS, Rasmussen PC, Ridgely RS, Stattersfield AJ, Bennett PM, Blackburn TM, Gaston KJ, Owens IPF. 2005. Global hotspots of species richness are not congruent with endemism or threat. Nature 436: 1016–1019. | |
dc.source.bibliographicCitation | Panter CT, Clegg RL, Moat J, Bachman SP, Klitgård BB, White RL. 2020. To clean or not to clean: Cleaning open-source data improves extinction risk assessments for threatened plant species. Conservation Science and Practice 2: 1–14. | |
dc.source.bibliographicCitation | Parra C, Díaz S. 2016. Herbarios y Jardines Botánicos : Testimonios de nuestra nuestra Biodiversidad. Bogotá: Universidad Nacional de Colombia (sede Bogotá). | |
dc.source.bibliographicCitation | Ramirez-Villegas J, Cuesta F, Devenish C, Peralvo M, Jarvis A, Arnillas CA. 2014. Using species distributions models for designing conservation strategies of Tropical Andean biodiversity under climate change. Journal for Nature Conservation 22: 391–404. | |
dc.source.bibliographicCitation | Ramirez-Villegas J, Jarvis A, Touval J. 2012. Analysis of threats to South American flora and its implications for conservation. Journal for Nature Conservation 20: 337–348. | |
dc.source.bibliographicCitation | Reddy S, Dávalos L. 2003. Geographical sampling bias and its implications for conservation priorities in Africa. Journal of Biogeography 30: 1719–1727. | |
dc.source.bibliographicCitation | Rowe R. 2005. Elevational gradient analyses and the use of historical museum specimens: A cautionary tale. Journal of Biogeography 32: 1883–1897. | |
dc.source.bibliographicCitation | Serrano J, Richardson JE, Pennington TD, Cortes-B R, Cardenas D, Elliott A, Jimenez I. 2018. Biotic homogeneity of putative biogeographic units in the Neotropics: A test with Sapotaceae. Diversity and Distributions 24: 1121–1135. | |
dc.source.bibliographicCitation | Sousa-Baena MS, Couto L, Townsend A. 2013. Completeness of digital accessible knowledge of the plants of Brazil and priorities for survey and inventory. Diversity and Distributions 20: 1–13. | |
dc.source.bibliographicCitation | Sousa-Baena MS, Garcia LC, Townsend Peterson a. 2014. Knowledge behind conservation status decisions: Data basis for ‘Data Deficient’ Brazilian plant species. Biological Conservation 173: 80–89. | |
dc.source.bibliographicCitation | Speed JDM, Bendiksby M, Finstad AG, Hassel K, Kolstad AL, Prestø T. 2018. Contrasting spatial, temporal and environmental patterns in observation and specimen based species occurrence data. PLoS ONE 13: 1–17. | |
dc.source.bibliographicCitation | Stropp J, Ladle RJ, Ana AC, Hortal J, Gaffuri J, H. Temperley W, Olav Skøien J, Mayaux P. 2016. Mapping ignorance: 300 years of collecting flowering plants in Africa. Global Ecology and Biogeography 25: 1085–1096. | |
dc.source.bibliographicCitation | Suarez AV., Tsutsui ND. 2004. The Value of Museum Collections for Research and Society. BioScience 54: 66. | |
dc.source.bibliographicCitation | Syfert MM, Smith MJ, Coomes DA. 2013. The Effects of Sampling Bias and Model Complexity on the Predictive Performance of MaxEnt Species Distribution Models. PLoS ONE 8. | |
dc.source.bibliographicCitation | Troudet J, Grandcolas P, Blin A, Vignes-Lebbe R, Legendre F. 2017. Taxonomic bias in biodiversity data and societal preferences. Scientific Reports 7: 1–14. | |
dc.source.bibliographicCitation | Veiga AK, Saraiva AM, Chapman AD, Morris PJ, Gendreau C, Schigel D, Robertson TJ. 2017. A conceptual framework for quality assessment and management of biodiversity data. PLoS ONE 12: 1–20. | |
dc.source.bibliographicCitation | Vogel C, Bordignon SA de L, Trevisan R, Boldrini II. 2017. Implications of poor taxonomy in conservation. Journal for Nature Conservation 36: 10–13. | |
dc.source.instname | instname:Universidad del Rosario | |
dc.source.reponame | reponame:Repositorio Institucional EdocUR | |
dc.subject | Colombia herbarium specimens | |
dc.subject | Collecting bias | |
dc.subject | Flora colombiana | |
dc.subject | Northern Andes | |
dc.subject | Sampling completeness | |
dc.subject | Flora de Bogotá | |
dc.subject | Species richness | |
dc.subject | Tropical Andes | |
dc.subject.keyword | Collecting bias | |
dc.subject.keyword | Colombia herbarium specimens | |
dc.subject.keyword | Flora | |
dc.subject.keyword | Northern Andes | |
dc.subject.keyword | Sampoling completeness | |
dc.subject.keyword | Flora de Bogotá | |
dc.subject.keyword | Species richness | |
dc.subject.keyword | Tropical Andes | |
dc.title | Gaps and bias of the Colombian Andes flora in databases | |
dc.title.TranslatedTitle | Vacíos y sesgos de la flora de los Andes colombianos en las bases de datos | |
dc.type | doctoralThesis | |
dc.type.document | Tesis | |
dc.type.hasVersion | info:eu-repo/semantics/acceptedVersion | |
dc.type.spa | Tesis de doctorado | |
local.department.report | Escuela de Medicina y Ciencias de la Salud |
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