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Transcriptome mining for phylogenetic markers in a recently radiated genus of tropical plants (Renealmia L.f., Zingiberaceae)

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dc.creatorValderrama, Eugeniospa
dc.creatorRichardson, James-Edwardspa
dc.creatorKidner, Catherine A.spa
dc.creatorMadriñán, Santiagospa
dc.creatorStone, Graham N.spa
dc.date.accessioned2020-05-25T23:57:10Z
dc.date.available2020-05-25T23:57:10Z
dc.date.created2018spa
dc.description.abstractThe reconstruction of relationships within species-rich groups that have recently evolved in biodiversity hotspots is hampered by a lack of phylogenetically informative markers. It is also made difficult by the lack of sampling necessary to reconstruct a species-level phylogeny. We use transcriptome mining to search for markers to reconstruct a phylogeny of the amphi-Atlantic genus Renealmia L. f. (Zingiberaceae). We recover seven introns from single copy genes and use them to reconstruct the phylogeny of the genus together with a commonly used phylogenetic marker, internal transcribed spacers of ribosomal DNA (ITS) that has previously been used to reconstruct the phylogeny of the genus. We targeted genes with low numbers of base pairs that improves sequencing success using highly degraded DNA from herbarium specimens. The use of herbarium specimens greatly increased the number of species in the study as these were readily available in historical collections. Data were obtained for 14 of the 17 African species and 54 of the 65 Neotropical species. The phylogeny was well-supported for a number of Renealmia subgroups although relationships among those clades remained poorly supported. © 2017 Elsevier Inc.eng
dc.format.mimetypeapplication/pdf
dc.identifier.doihttps://doi.org/10.1016/j.ympev.2017.10.001
dc.identifier.issn10959513
dc.identifier.issn10557903
dc.identifier.urihttps://repository.urosario.edu.co/handle/10336/22621
dc.language.isoengspa
dc.publisherAcademic Press Inc.spa
dc.relation.citationEndPage24
dc.relation.citationStartPage13
dc.relation.citationTitleMolecular Phylogenetics and Evolution
dc.relation.citationVolumeVol. 119
dc.relation.ispartofMolecular Phylogenetics and Evolution, ISSN:10959513, 10557903, Vol.119,(2018); pp. 13-24spa
dc.relation.urihttps://www.scopus.com/inward/record.uri?eid=2-s2.0-85032944773&doi=10.1016%2fj.ympev.2017.10.001&partnerID=40&md5=f6f72d9b1025d88f2ec3e89ca6dabebdspa
dc.rights.accesRightsinfo:eu-repo/semantics/openAccess
dc.rights.accesoAbierto (Texto Completo)spa
dc.source.instnameinstname:Universidad del Rosariospa
dc.source.reponamereponame:Repositorio Institucional EdocURspa
dc.subject.keywordMessenger RNAspa
dc.subject.keywordMessengereng
dc.subject.keywordRibosome DNAspa
dc.subject.keywordRibosomaleng
dc.subject.keywordDNAeng
dc.subject.keywordTranscriptomespa
dc.subject.keywordBayes theoremspa
dc.subject.keywordClassificationspa
dc.subject.keywordDNA sequencespa
dc.subject.keywordGenetic markerspa
dc.subject.keywordGeneticsspa
dc.subject.keywordIntronspa
dc.subject.keywordMetabolismspa
dc.subject.keywordPhylogenyspa
dc.subject.keywordSpecies differencespa
dc.subject.keywordTropic climatespa
dc.subject.keywordZingiberaceaespa
dc.subject.keywordBayes Theoremspa
dc.subject.keywordDNAeng
dc.subject.keywordGenetic Markersspa
dc.subject.keywordIntronsspa
dc.subject.keywordPhylogenyspa
dc.subject.keywordRNAeng
dc.subject.keywordSequence Analysiseng
dc.subject.keywordSpecies Specificityspa
dc.subject.keywordTranscriptomespa
dc.subject.keywordTropical Climatespa
dc.subject.keywordZingiberaceaespa
dc.subject.keywordDiversificationspa
dc.subject.keywordMarkersspa
dc.subject.keywordNeotropicalspa
dc.subject.keywordPhylogeneticsspa
dc.subject.keywordTranscriptomesspa
dc.subject.keywordZingiberaceaespa
dc.titleTranscriptome mining for phylogenetic markers in a recently radiated genus of tropical plants (Renealmia L.f., Zingiberaceae)spa
dc.typearticleeng
dc.type.hasVersioninfo:eu-repo/semantics/publishedVersion
dc.type.spaArtículospa
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